Daron M. Standley

Daron M. Standley



BS Physics, Harvey Mudd College, Claremont, CA
Ph.D. Chemistry, Columbia University, New York


Scientific Software Developer Schrodinger, Inc.
Senior Researcher, Protein Data Bank Japan, Institute for Protein Research, Osaka University
Guest Associate Professor, Center for Advanced Medical Engineering and Informatics, Institute for Protein Research, Osaka University



Iwasaki , H. et al. The IκB kinase complex regulates TLR/IL-1R-induced cytokine mRNA stability by controlling Regnase-1 degradation. Nature Immunology in press (2011).
Patil, A., Teraguchi, S., Dinh, H., Nakai, K. & Standley, D. M. Functional Annotation of Intrinsically Disordered Domains by their Amino Acid Content using IDD Navigator Pacific Symposium on Biocomputing 16, in press (2011).
Lis, M. et al. Bridging the gap between single-template and fragment based protein structure modeling using Spanner. Immunome Research 7(2011).
Liang, S., Zheng, D., Zhang, C. & Standley, D. M. Fast and accurate prediction of protein side-chain conformations. Bioinformatics 27, 2913-2914 (2011).
Liang, S., Zhang, C. & Standley, D. M. Protein loop selection using orientation-dependent force fields derived by parameter optimization.Proteins 79, 2260-2267 (2011).
Kitamura, A. et al. A mutation in the immunoproteasome subunit PSMB8 causes autoinflammation and lipodystrophy in humans. J Clin Invest 121, 4150-4160 (2011).
Standley, D. M., Yamashita, R., Kinjo, A. R., Toh, H. & Nakamura, H. SeSAW: balancing sequence and structural information in protein functional mapping. Bioinformatics 26, 1258-1259 (2010).
Satoh, T. et al. The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection. Nat Immunol (2010).
Yamamoto, M. et al. A single polymorphic amino acid on Toxoplasma gondii kinase ROP16 determines the direct and strain-specific activation of Stat3. J Exp Med 206, 2747-2760 (2009).
Matsushita, K. et al. Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay. Nature 458, 1185-1190 (2009).
Standley, D. M., Kinjo, A. R., Kinoshita, K. & Nakamura, H. Protein structure databases with new web services for structural biology and biomedical research. Brief Bioinform 9, 276-285 (2008).